PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0056s0096.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 277aa    MW: 29297.9 Da    PI: 8.5743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0056s0096.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.50.00091106126121
                          EEETTTTEEESSHHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHir 21 
                          y+C+ C+k+F++   L  H  
  Kaladp0056s0096.1.p 106 YECKTCSKTFPSFQALGGHRA 126
                          99*********9888877765 PP

2zf-C2H213.50.00022180202123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cg  Fs+   L  H+r+H
  Kaladp0056s0096.1.p 180 HRCSVCGSEFSSGQALGGHMRRH 202
                          79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.62E-8105128No hitNo description
SMARTSM003550.29106128IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138106133IPR007087Zinc finger, C2H2
PfamPF139122.9E-10106128IPR007087Zinc finger, C2H2
PROSITE patternPS000280108128IPR007087Zinc finger, C2H2
SuperFamilySSF576677.62E-8175202No hitNo description
PfamPF139121.6E-11179204IPR007087Zinc finger, C2H2
SMARTSM003550.014180202IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702180202IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKQSKLLSKN RASLQTRNTL IIAMELPVDE VAAASLVPGA LQNISKGKRN KRSSGIASDE  60
EEDRRSYDSV VTEEEQDLAN CLILLARAEV VVGAKRRIAD VMGGCYECKT CSKTFPSFQA  120
LGGHRAGHGK PKSHIDDCDF APSSSSNCSV SPQPPTPPTT AANRNDVVVA KSSTRPSKAH  180
RCSVCGSEFS SGQALGGHMR RHRAVPVPSR SPSAGPSSMG SGGASSLEAK TRSFLSLDLN  240
LPAPEVGEIS QCQQNAAFHQ LETHAFSTHA LLGCHY*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.11e-30C2H2 family protein